eF-site/ActiveSite : Database for molecular surfaces of protein active sites
نویسندگان
چکیده
منابع مشابه
eF-site and PDBjViewer: database and viewer for protein functional sites
UNLABELLED The electrostatic-surface of functional site (eF-site) is a database for the molecular surfaces of protein functional sites. To enable browsing of each molecular surface along with the atomic model, we have developed a new three-dimensional interactive viewer, PDBjViewer, that can be used both as an applet and as a stand-alone program. AVAILABILITY The eF-site database and PDBjView...
متن کاملIdentification of protein biochemical functions by similarity search using the molecular surface database eF-site.
The identification of protein biochemical functions based on their three-dimensional structures is strongly required in the post-genome-sequencing era. We have developed a new method to identify and predict protein biochemical functions using the similarity information of molecular surface geometries and electrostatic potentials on the surfaces. Our prediction system consists of a similarity se...
متن کاملAnalysis of Complementarity of Protein-Protein and Protein-DNA Interactions Using the Molecular Surface Database, eF-site
Structural genomics project now producing a large number of protein 3D structures, and the structural information will give us a lot of information on the protein molecular functions. On the other hand, it is not an easy task to solve the structure of protein complexes especially when the complexes are transient, even though the formation of such transient complexes has critical roles to expres...
متن کاملPromise: a new database of information on prosthetic centres and metal ions in protein active sites.
K.N.Degtyarenko1, A.C.T.North and J.B.C.Findlay combination of the ENZYME and COMPOUND databases. It contains information such as structural formulae of low molecuDepartment of Biochemistry and Molecular Biology, University of Leeds, lar mass biological ligands: enzyme prosthetic centres, coLeeds LS2 9JT, UK enzymes, substrates and products and links to the corresponding 1To whom correspondence...
متن کاملPROMISE: a database of information on prosthetic centres and metal ions in protein active sites
The PROMISE (Prosthetic centres andmetalions in protein activesites) database aims to gather together comprehensive sequence, structural, functional and bibliographic information on proteins which possess prosthetic centres, with an emphasis on active site structure and function. The database is available on the World Wide Web at http://bioinf.leeds.ac.uk/promise/
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ژورنال
عنوان ژورنال: Seibutsu Butsuri
سال: 2000
ISSN: 0582-4052,1347-4219
DOI: 10.2142/biophys.40.s194_1